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For now I’m going with the deer and maggots analogy.
Yeah, the article I linked does quite a nice job summarizing the current research, at least current as of 5 years ago, when the supposition of Philaster and several other species of ciliates/protozoans was hypothesized to be the root cause of half a dozen coral diseases, including RTN. The article mentions that it's not easy to go from correlation (finding the ciliates at the site of the damage) to causation.
Perhaps additional peer-reviewed research will establish a causative link.