Peer Review database in the hobby?

[Pankney72]

Hey all. I’m a guy with a science (biochemist/cell biologist) background and I’ve been reefing with a pretty minimalist system for quite a while now. That said, I’ve finally got the resources to do a custom build 250 gal before I move for work, and my question is this.

I’m sure peer reviewed stuff for our hobby is out there. @Humblefish , @randyBRS , and @Randy Holmes-Farley mention studies in their advice but I don’t usually see the references.

Where do you guys get your science from? Any good newer books out there like The Conscientious Marine Aquarist? I want to add bells and whistles to my new tank but I want to make sure they will add QOL to my system. Thanks a ton!

(by the by minimalist is my moderately stocked 125 mixed reef with good LEDs, skimmer, filter pads and religious water changes.)

 

[N.Sreefer]

Personally I just skim the studies on google scholar some great studies on chemistry in reef aquaria and trace elements in salt water. I find every book I see is outdated on taxonomy and modern lighting, filtration, and sources for livestock. If you have research credentials at work/school you can normally access the studies for free through your institution.

 

[NoahLikesFish]

i learn from experience and i use basically the same method you would in the 90s/2000s except i dose seachem & i run leds. no skimmer, filtration, water changes, just biofilter and flow can work miracles.

 

[NoahLikesFish]

i read on some stuff concerning like fish biology and reef biology and stuff but i just keep it simple and it works well. walstad's book on the planted aquarium is good for learning what makes algae tick & paul b's book does a good job talking about diy & its funny.

 

[Pankney72]

Personally I just skim the studies on google scholar some great studies on chemistry in reef aquaria and trace elements in salt water. I find every book I see is outdated on taxonomy and modern lighting, filtration, and sources for livestock. If you have research credentials at work/school you can normally access the studies for free through your institution.

That’s what I typically do, and I do have the access through my employer. Google scholar kicks the teeth in on other search engines haha. To be honest I posted this because I was looking at UV sterilizers for ich management but I couldn’t find a paper with information that would be transferable to a home system.

 

[jcolliii]

GS is pretty good, but if you have a large local university nearby, the databases that are paid for by some university systems will directly link a TON of full text stuff that GS won't. You can also sign up for an account on Research Gate - lots of folks share their work on that site. Also, if you find an article on GS that you want or need, email the lead or second authors - they usually have a pdf that they can share.

 

[flagg37]

You’ve got all the peers needed to review your stuff right here.

 

[Pankney72]

GS is pretty good, but if you have a large local university nearby, the databases that are paid for by some university systems will directly link a TON of full text stuff that GS won't. You can also sign up for an account on Research Gate - lots of folks share their work on that site. Also, if you find an article on GS that you want or need, email the lead or second authors - they usually have a pdf that they can share.

I use Google scholar to find what I need, then swap over to our systems for full text. Thank you for the quick response!

 

[NeonRabbit221B]

@Lasse often gives references to nitrite studies and may be able to help there.

 

[J1a]

That’s what I typically do, and I do have the access through my employer. Google scholar kicks the teeth in on other search engines haha. To be honest I posted this because I was looking at UV sterilizers for ich management but I couldn’t find a paper with information that would be transferable to a home system.

Try searching under mariculture journals. They have much more funding than reefing.

Imo the biggest hurdle to us hobbyist is not the lack of research (there are plenty) the issue is that hobbyist equipment is less transparent.

For instance, we know from some literature that ich can be reliably killed with exposure to UV radiation above 300000 uws/cm2. However there is no way for us to know, or measure that a given hobbyist equipment produce such irradiation.

 

[fish farmer]

Try searching under mariculture journals. They have much more funding than reefing.

Imo the biggest hurdle to us hobbyist is not the lack of research (there are plenty) the issue is that hobbyist equipment is less transparent.

For instance, we know from some literature that ich can be reliably killed with exposure to UV radiation above 300000 uws/cm2. However there is no way for us to know, or measure that a given hobbyist equipment produce such irradiation.

I was going to say the same thing aquaculture\mariculture, using the same equipment just on a bigger scale.

 

[N.Sreefer]

I would say recirculating aquaculture but not mariculture or flow through aquaculture. We don't have the advantage of exchange with the ocean.

 

[Pankney72]

Try searching under mariculture journals. They have much more funding than reefing.

Imo the biggest hurdle to us hobbyist is not the lack of research (there are plenty) the issue is that hobbyist equipment is less transparent.

For instance, we know from some literature that ich can be reliably killed with exposure to UV radiation above 300000 uws/cm2. However there is no way for us to know, or measure that a given hobbyist equipment produce such irradiation.

Exactly! I’m a bit of a purist in translating research into something applicable on my scale. Knowing that a battery that produces the UV fury of a thousand suns kills ich or some other industrial/commercial grade equipment equivalent doesn’t necessarily help me make purchase decisions for a 250 gallon home tank

 

[fish farmer]

This company sells various sized units commercial and smaller, they used to have data sheets, but I noticed the pages weren't found.
The company used to be Aquatic Ecosystems, https://pentairaes.com/. I know they used to do local display type installations in Florida so they were knowledgeable in smaller scale operations.

 

[Timfish]

Google scholar has been very helpful for me and you'll see me posting refferneces alot. There are some good videos on youtube (and lots of not so good ones). Here's some links I have bookmakred if you're interested:


"Coral Reefs in the Microbial Seas" This video compliments Rohwer's book of the same title (Paper back is ~$20, Kindle is ~$10), both deal with the conflicting roles of the different types of DOC in reef ecosystems. While there is overlap bewteen his book and the video both have information not covered by the other and together give a broader view of the complex relationships found in reef ecosystems


Changing Seas - Mysterious Microbes


Nitrogen cycling in hte coral holobiont


BActeria and Sponges


Maintenance of Coral Reef Health (refferences at the end)


Optical Feedback Loop in Colorful Coral Bleaching


Richard Ross What's up with phosphate"


Indirect effects of algae on coral: algae‐mediated, microbe‐induced coral mortality

Error - Cookies Turned Off

onlinelibrary.wiley.com

Influence of coral and algal exudates on microbially mediated reef metabolism.
Coral DOC improves oxygen (autotrophy), algae DOC reduces oxygen (heterotrophy).

Influence of coral and algal exudates on microbially mediated reef metabolism

Benthic primary producers in tropical reef ecosystems can alter biogeochemical cycling and microbial processes in the surrounding seawater. In order to quantify these influences, we measured rates of photosynthesis, respiration, and dissolved organic carbon (DOC) exudate release by the dominant...

peerj.com

Role of elevated organic carbon levels and microbial activity in coral mortality

http://www.int-res.com/articles/meps2006/314/m314p119.pdf

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity
Algae releases significantly more DOC into the water than coral.

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity

Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in...

journals.plos.org

Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species.
Starch and sugars (doc) caused coral death but not high nitrates, phosphates or ammonium.

http://www.int-res.com/articles/meps2005/294/m294p173.pdf

Visualization of oxygen distribution patterns caused by coral and algae

Visualization of oxygen distribution patterns caused by coral and algae

Planar optodes were used to visualize oxygen distribution patterns associated with a coral reef associated green algae (Chaetomorpha sp.) and a hermatypic coral (Favia sp.) separately, as standalone organisms, and placed in close proximity mimicking coral-algal interactions. Oxygen patterns were...

peerj.com

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates
Exposure to exudates derived from turf algae stimulated higher oxygen drawdown by the coral-associated bacteria.

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates

Algae-derived dissolved organic matter has been hypothesized to induce mortality of reef building corals. One proposed killing mechanism is a zone of hypoxia created by rapidly growing microbes. To investigate this hypothesis, biological oxygen demand ...

www.ncbi.nlm.nih.gov

Microbial ecology: Algae feed a shift on coral reefs

Microbial ecology: Algae feed a shift on coral reefs - Nature Microbiology

Human pressures on coral reefs are giving macroalgae a competitive advantage over reef-building corals. These algae support larger, and potentially pathogenic, microbial populations that are metabolically primed for less-efficient, yet faster, carbohydrate remineralization, perpetuating a...

www.nature.com

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages - PubMed

Increasing algal cover on tropical reefs worldwide may be maintained through feedbacks whereby algae outcompete coral by altering microbial activity. We hypothesized that algae and coral release compositionally distinct exudates that differentially alter bacterioplankton growth and community...

www.ncbi.nlm.nih.gov

Sugar enrichment provides evidence for a role of nitrogen fixation in coral bleaching

Error - Cookies Turned Off

onlinelibrary.wiley.com

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution
(here's an argument for maintaining heavy fish loads if you're carbon dosing)

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution

Labile dissolved organic carbon (DOC) is a major pollutant in coastal marine environments affected by anthropogenic impacts, and may significantly con…

www.sciencedirect.com

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton - The ISME Journal

Coastal pollution and algal cover are increasing on many coral reefs, resulting in higher dissolved organic carbon (DOC) concentrations. High DOC concentrations strongly affect microbial activity in reef waters and select for copiotrophic, often potentially virulent microbial populations. High...

www.nature.com

Unseen players shape benthic competition on coral reefs.

Unseen players shape benthic competition on coral reefs - PubMed

Recent work has shown that hydrophilic and hydrophobic organic matter (OM) from algae disrupts the function of the coral holobiont and promotes the invasion of opportunistic pathogens, leading to coral morbidity and mortality. Here we refer to these dynamics as the (3)DAM [dissolved organic...

www.ncbi.nlm.nih.gov

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance.

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance - PubMed

Diverse microbial communities associate with coral tissues and mucus, providing important protective and nutritional services, but once disturbed, the microbial equilibrium may shift from a beneficial state to one that is detrimental or pathogenic. Macroalgae (e.g., seaweeds) can physically and...

www.ncbi.nlm.nih.gov

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides.

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides - PubMed

With the continued and unprecedented decline of coral reefs worldwide, evaluating the factors that contribute to coral demise is of critical importance. As coral cover declines, macroalgae are becoming more common on tropical reefs. Interactions between these macroalgae and corals may alter the...

www.ncbi.nlm.nih.gov

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals.

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals - PubMed

Benthic macroalgae can be abundant on present-day coral reefs, especially where rates of herbivory are low and/or dissolved nutrients are high. This study investigated the impact of macroalgal extracts on both coral-associated bacterial assemblages and sublethal stress response of corals. Crude...

www.ncbi.nlm.nih.gov

Biophysical and physiological processes causing oxygen loss from coral reefs.

https://elifesciences.org/articles/49114.pdf

Global microbialization of coral reefs
DDAM Proven

Global microbialization of coral reefs - Nature Microbiology

Analysis of 60 sites in three ocean basins suggests that overgrowth of fleshy algae on coral reefs supports higher microbial abundances dominated by copiotrophic, potentially pathogenic bacteria via the provision of dissolved inorganic carbon.

www.nature.com

Coral Reef Microorganisms in a Changing Climate, Fig 3

Coral Reef Microorganisms in a Changing Climate

Coral reefs are one of the most diverse and productive ecosystems on the planet, yet they have suffered tremendous losses due to anthropogenic disturbances and are predicted to be one of the most adversely affected habitats under future climate change ...

www.ncbi.nlm.nih.gov

Ecosystem Microbiology of Coral Reefs: Linking Genomic, Metabolomic, and Biogeochemical Dynamics from Animal Symbioses to Reefscape Processes

https://msystems.asm.org/content/msys/3/2/e00162-17.full.pdf

Because sponges are essential players in the carbon, nitrogen and phosphorus cycle(s) on reefs here's some links to research done with them.

Element cycling on tropical coral reefs.
This is Jasper de Geoij's ground breaking research on reef sponges. (The introduction is in Dutch but the content is in English.)

https://www.rug.nl/research/portal/files/14555035/13completethesis.pdf

Sponge symbionts and the marine P cycle

Sponge symbionts and the marine P cycle

Marine sponges are ubiquitous colonizers of shallow, clear-water environments in the oceans (1, 2). Sponges have emerged as significant mediators of biogeochemical fluxes in coastal zones by virtue of respiring organic matter and facilitating both the consumption and release of nutrients (3, 4)...

www.pnas.org

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Coral reefs are highly productive ecosystems that raise a conundrum called “Darwin’s paradox”: How can high production flourish in low-nutrient conditions? We show here that in three abundant Caribbean sponges, the granules that have been commonly observed in sponge tissue for decades are...

www.pnas.org

Differential recycling of coral and algal dissolved organic matter via the sponge loop.
Sponges treat DOC from algae differently than DOC from corals

Error - Cookies Turned Off

besjournals.onlinelibrary.wiley.com

Surviving in a Marine Desert The Sponge Loop Retains Resources Within Coral Reefs
Dissolved organic carbon and nitrogen are quickly processed by sponges and released back into the reef food web in hours as carbon and nitrogen rich detritus.

(PDF) 2013 deGoeij Science Sponge loop

PDF | On Jun 23, 2015, Jasper M de Goeij and others published 2013 deGoeij Science Sponge loop | Find, read and cite all the research you need on ResearchGate

www.researchgate.net

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Coral-excavating sponges are the most important bioeroders on Caribbean reefs and increase in abundance throughout the region. This increase is commonly attributed to a concomitant increase in food availability due to eutrophication and pollution. We ...

www.ncbi.nlm.nih.gov

The Role of Marine Sponges in Carbon and Nitrogen Cycles of COral Reefs and Nearshore Environments.

The role of marine sponges in carbon and nitrogen cycles of coral reef and nearshore environments - ProQuest

Explore millions of resources from scholarly journals, books, newspapers, videos and more, on the ProQuest Platform.

search.proquest.com

Aura-biomes are present in the water layer above coral reef benthic macro-organisms

Aura-biomes are present in the water layer above coral reef benthic macro-organisms - PubMed

As coral reef habitats decline worldwide, some reefs are transitioning from coral- to algal-dominated benthos with the exact cause for this shift remaining elusive. Increases in the abundance of microbes in the water column has been correlated with an increase in coral disease and reduction in...

www.ncbi.nlm.nih.gov

Establishing a Healthy Microbiome in a New Aquarium Using Live Rock

About this article This article describes an experiment documenting the effects of live rock in a newly established aquarium. While I’ve tried to tell the story as briefly as I can, it’s the story of a month-long study of replicated tanks, with analysis of both water chemistry and the microbial...

www.reef2reef.com

Elemental Analysis of Skimmate

Elemental Analysis of Skimmate: What Does a Protein Skimmer Actually Remove from Aquarium Water?

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. The chemical/elemental composition of skimmate generated by an H&S 200-1260 skimmer on a 175-gallon reef tank over the course of several days or a week had some surprises.

reefs.com

Bacterial Counts in Reef Aquarium Water

Bacterial Counts in Reef Aquarium Water: Baseline Values and Modulation by Carbon Dosing, Protein Skimming, and Granular Activated Carbon Filtration

What are the bacteria populations in the water column of reef tanks, and how does that value compare with bacterial counts in authentic reef water? Does carbon dosing indeed increase water column bacteria populations (i.e., is growth carbon limited)? Does mechanical filtration (protein skimming...

reefs.com

And here's some thought provoking papers:

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals: Ingenta Connect

www.ingentaconnect.com

Amino acids a source of nitrogen for corals

Uptake of dissolved free amino acids by the scleractinian coral Stylophora pistillata

SUMMARY. This study was designed to assess the importance of dissolved free amino acids (DFAA) as a nitrogen source for the scleractinian coral Stylophora pistillata. For this purpose, experiments were performed using 15N-enriched DFAAs, and %15N enrichment was measured both in animal tissue and...

journals.biologists.com

Urea a source of nitrogen for corals

Urea uptake by the scleractinian coral Stylophora pistillata

Urea can be one of the major sources of nitrogen for phytoplankton, but little is known about its importance for corals. Experiments were therefore de…

www.sciencedirect.com

Diazotrpophs a source of nitrogen for corals

Diazotrophs: a non-negligible source of nitrogen for the tropical coral Stylophora pistillata - PubMed

Corals are mixotrophs: they are able to fix inorganic carbon through the activity of their symbiotic dinoflagellates and to gain nitrogen from predation on plankton and uptake of dissolved organic and inorganic nutrients. They also live in close association with diverse diazotrophic communities...

pubmed.ncbi.nlm.nih.gov

Context Dependant Effects of Nutrient Loading on the Coral-Algal Mutualism

Context-dependent effects of nutrient loading on the coral-algal mutualism | Request PDF

Request PDF | Context-dependent effects of nutrient loading on the coral-algal mutualism | Human-mediated increases in nutrient availability alter patterns of primary production, impact species diversity, and threaten ecosystem function.... | Find, read and cite all the research you need on...

www.researchgate.net

An experimental mesocosm for long-term studies of reef corals | Journal of the Marine Biological Association of the United Kingdom | Cambridge Core

An experimental mesocosm for long-term studies of reef corals - Volume 92 Issue 4

www.cambridge.org

An Experimental Mesocosm for Longterm Studies of Reef Corals

Phosphate Deficiency:
Nutrient enrichment can increase the susceptibility of reef corals to bleaching:

Nutrient enrichment can increase the susceptibility of reef corals to bleaching - Nature Climate Change

Increased dissolved inorganic nitrogen (DIN) concentrations in sea water have been linked to a reduction of the temperature threshold at which corals bleach, however, the mechanism underlying this change is not known. This phenomenon is now explained in terms of increased phosphatase activities...

www.nature.com

Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont:

Frontiers | Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont

Reef building corals associated with symbiotic algae (zooxanthellae) can access environmental nutrients from different sources, most significantly via the up...

www.frontiersin.org

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Enrichment of reef environments with dissolved inorganic nutrients is considered a major threat to the survival of corals living in symbiosis with din…

www.sciencedirect.com

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Phosphate contamination can negatively affect corals, modifying growth rates, skeletal density, reproduction, mortality, and zooxanthellae. We determi…

www.sciencedirect.com

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

SUMMARYSeveral untested aspects of the regulation of inorganic nutrient uptake were examined using nutrient depletion experiments with the symbiotic coral Stylophora pistillata. The total inhibition of phosphate uptake in artificial seawater lacking sodium indicates the involvement of a...

jeb.biologists.org

Phosphorus metabolism of reef organisms with algal symbionts

https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecm.1217?casa_token=ziDzrEEJ8g0AAAAA%3AHnfuGTIntMdqOtx2ij-lnoTh7qVg8VBhYFz98e60zfBEvx5IcIVGhmlpUYmzIJuqUNVm0sG8_0vth6lq

2657円まるいち 博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

2657円まるいち 博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

therichross.com

 

[Pankney72]

Google scholar has been very helpful for me and you'll see me posting refferneces alot. There are some good videos on youtube (and lots of not so good ones). Here's some links I have bookmakred if you're interested:


"Coral Reefs in the Microbial Seas" This video compliments Rohwer's book of the same title (Paper back is ~$20, Kindle is ~$10), both deal with the conflicting roles of the different types of DOC in reef ecosystems. While there is overlap bewteen his book and the video both have information not covered by the other and together give a broader view of the complex relationships found in reef ecosystems


Changing Seas - Mysterious Microbes


Nitrogen cycling in hte coral holobiont


BActeria and Sponges


Maintenance of Coral Reef Health (refferences at the end)


Optical Feedback Loop in Colorful Coral Bleaching


Richard Ross What's up with phosphate"


Indirect effects of algae on coral: algae‐mediated, microbe‐induced coral mortality

Error - Cookies Turned Off

onlinelibrary.wiley.com

Influence of coral and algal exudates on microbially mediated reef metabolism.
Coral DOC improves oxygen (autotrophy), algae DOC reduces oxygen (heterotrophy).

Influence of coral and algal exudates on microbially mediated reef metabolism

Benthic primary producers in tropical reef ecosystems can alter biogeochemical cycling and microbial processes in the surrounding seawater. In order to quantify these influences, we measured rates of photosynthesis, respiration, and dissolved organic carbon (DOC) exudate release by the dominant...

peerj.com

Role of elevated organic carbon levels and microbial activity in coral mortality

http://www.int-res.com/articles/meps2006/314/m314p119.pdf

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity
Algae releases significantly more DOC into the water than coral.

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity

Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in...

journals.plos.org

Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species.
Starch and sugars (doc) caused coral death but not high nitrates, phosphates or ammonium.

http://www.int-res.com/articles/meps2005/294/m294p173.pdf

Visualization of oxygen distribution patterns caused by coral and algae

Visualization of oxygen distribution patterns caused by coral and algae

Planar optodes were used to visualize oxygen distribution patterns associated with a coral reef associated green algae (Chaetomorpha sp.) and a hermatypic coral (Favia sp.) separately, as standalone organisms, and placed in close proximity mimicking coral-algal interactions. Oxygen patterns were...

peerj.com

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates
Exposure to exudates derived from turf algae stimulated higher oxygen drawdown by the coral-associated bacteria.

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates

Algae-derived dissolved organic matter has been hypothesized to induce mortality of reef building corals. One proposed killing mechanism is a zone of hypoxia created by rapidly growing microbes. To investigate this hypothesis, biological oxygen demand ...

www.ncbi.nlm.nih.gov

Microbial ecology: Algae feed a shift on coral reefs

Microbial ecology: Algae feed a shift on coral reefs - Nature Microbiology

Human pressures on coral reefs are giving macroalgae a competitive advantage over reef-building corals. These algae support larger, and potentially pathogenic, microbial populations that are metabolically primed for less-efficient, yet faster, carbohydrate remineralization, perpetuating a...

www.nature.com

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages - PubMed

Increasing algal cover on tropical reefs worldwide may be maintained through feedbacks whereby algae outcompete coral by altering microbial activity. We hypothesized that algae and coral release compositionally distinct exudates that differentially alter bacterioplankton growth and community...

www.ncbi.nlm.nih.gov

Sugar enrichment provides evidence for a role of nitrogen fixation in coral bleaching

Error - Cookies Turned Off

onlinelibrary.wiley.com

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution
(here's an argument for maintaining heavy fish loads if you're carbon dosing)

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution

Labile dissolved organic carbon (DOC) is a major pollutant in coastal marine environments affected by anthropogenic impacts, and may significantly con…

www.sciencedirect.com

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton - The ISME Journal

Coastal pollution and algal cover are increasing on many coral reefs, resulting in higher dissolved organic carbon (DOC) concentrations. High DOC concentrations strongly affect microbial activity in reef waters and select for copiotrophic, often potentially virulent microbial populations. High...

www.nature.com

Unseen players shape benthic competition on coral reefs.

Unseen players shape benthic competition on coral reefs - PubMed

Recent work has shown that hydrophilic and hydrophobic organic matter (OM) from algae disrupts the function of the coral holobiont and promotes the invasion of opportunistic pathogens, leading to coral morbidity and mortality. Here we refer to these dynamics as the (3)DAM [dissolved organic...

www.ncbi.nlm.nih.gov

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance.

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance - PubMed

Diverse microbial communities associate with coral tissues and mucus, providing important protective and nutritional services, but once disturbed, the microbial equilibrium may shift from a beneficial state to one that is detrimental or pathogenic. Macroalgae (e.g., seaweeds) can physically and...

www.ncbi.nlm.nih.gov

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides.

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides - PubMed

With the continued and unprecedented decline of coral reefs worldwide, evaluating the factors that contribute to coral demise is of critical importance. As coral cover declines, macroalgae are becoming more common on tropical reefs. Interactions between these macroalgae and corals may alter the...

www.ncbi.nlm.nih.gov

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals.

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals - PubMed

Benthic macroalgae can be abundant on present-day coral reefs, especially where rates of herbivory are low and/or dissolved nutrients are high. This study investigated the impact of macroalgal extracts on both coral-associated bacterial assemblages and sublethal stress response of corals. Crude...

www.ncbi.nlm.nih.gov

Biophysical and physiological processes causing oxygen loss from coral reefs.

https://elifesciences.org/articles/49114.pdf

Global microbialization of coral reefs
DDAM Proven

Global microbialization of coral reefs - Nature Microbiology

Analysis of 60 sites in three ocean basins suggests that overgrowth of fleshy algae on coral reefs supports higher microbial abundances dominated by copiotrophic, potentially pathogenic bacteria via the provision of dissolved inorganic carbon.

www.nature.com

Coral Reef Microorganisms in a Changing Climate, Fig 3

Coral Reef Microorganisms in a Changing Climate

Coral reefs are one of the most diverse and productive ecosystems on the planet, yet they have suffered tremendous losses due to anthropogenic disturbances and are predicted to be one of the most adversely affected habitats under future climate change ...

www.ncbi.nlm.nih.gov

Ecosystem Microbiology of Coral Reefs: Linking Genomic, Metabolomic, and Biogeochemical Dynamics from Animal Symbioses to Reefscape Processes

https://msystems.asm.org/content/msys/3/2/e00162-17.full.pdf

Because sponges are essential players in the carbon, nitrogen and phosphorus cycle(s) on reefs here's some links to research done with them.

Element cycling on tropical coral reefs.
This is Jasper de Geoij's ground breaking research on reef sponges. (The introduction is in Dutch but the content is in English.)

https://www.rug.nl/research/portal/files/14555035/13completethesis.pdf

Sponge symbionts and the marine P cycle

Sponge symbionts and the marine P cycle

Marine sponges are ubiquitous colonizers of shallow, clear-water environments in the oceans (1, 2). Sponges have emerged as significant mediators of biogeochemical fluxes in coastal zones by virtue of respiring organic matter and facilitating both the consumption and release of nutrients (3, 4)...

www.pnas.org

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Coral reefs are highly productive ecosystems that raise a conundrum called “Darwin’s paradox”: How can high production flourish in low-nutrient conditions? We show here that in three abundant Caribbean sponges, the granules that have been commonly observed in sponge tissue for decades are...

www.pnas.org

Differential recycling of coral and algal dissolved organic matter via the sponge loop.
Sponges treat DOC from algae differently than DOC from corals

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besjournals.onlinelibrary.wiley.com

Surviving in a Marine Desert The Sponge Loop Retains Resources Within Coral Reefs
Dissolved organic carbon and nitrogen are quickly processed by sponges and released back into the reef food web in hours as carbon and nitrogen rich detritus.

(PDF) 2013 deGoeij Science Sponge loop

PDF | On Jun 23, 2015, Jasper M de Goeij and others published 2013 deGoeij Science Sponge loop | Find, read and cite all the research you need on ResearchGate

www.researchgate.net

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Coral-excavating sponges are the most important bioeroders on Caribbean reefs and increase in abundance throughout the region. This increase is commonly attributed to a concomitant increase in food availability due to eutrophication and pollution. We ...

www.ncbi.nlm.nih.gov

The Role of Marine Sponges in Carbon and Nitrogen Cycles of COral Reefs and Nearshore Environments.

The role of marine sponges in carbon and nitrogen cycles of coral reef and nearshore environments - ProQuest

Explore millions of resources from scholarly journals, books, newspapers, videos and more, on the ProQuest Platform.

search.proquest.com

Aura-biomes are present in the water layer above coral reef benthic macro-organisms

Aura-biomes are present in the water layer above coral reef benthic macro-organisms - PubMed

As coral reef habitats decline worldwide, some reefs are transitioning from coral- to algal-dominated benthos with the exact cause for this shift remaining elusive. Increases in the abundance of microbes in the water column has been correlated with an increase in coral disease and reduction in...

www.ncbi.nlm.nih.gov

Establishing a Healthy Microbiome in a New Aquarium Using Live Rock

About this article This article describes an experiment documenting the effects of live rock in a newly established aquarium. While I’ve tried to tell the story as briefly as I can, it’s the story of a month-long study of replicated tanks, with analysis of both water chemistry and the microbial...

www.reef2reef.com

Elemental Analysis of Skimmate

Elemental Analysis of Skimmate: What Does a Protein Skimmer Actually Remove from Aquarium Water?

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. The chemical/elemental composition of skimmate generated by an H&S 200-1260 skimmer on a 175-gallon reef tank over the course of several days or a week had some surprises.

reefs.com

Bacterial Counts in Reef Aquarium Water

Bacterial Counts in Reef Aquarium Water: Baseline Values and Modulation by Carbon Dosing, Protein Skimming, and Granular Activated Carbon Filtration

What are the bacteria populations in the water column of reef tanks, and how does that value compare with bacterial counts in authentic reef water? Does carbon dosing indeed increase water column bacteria populations (i.e., is growth carbon limited)? Does mechanical filtration (protein skimming...

reefs.com

And here's some thought provoking papers:

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals: Ingenta Connect

www.ingentaconnect.com

Amino acids a source of nitrogen for corals

Uptake of dissolved free amino acids by the scleractinian coral Stylophora pistillata

SUMMARY. This study was designed to assess the importance of dissolved free amino acids (DFAA) as a nitrogen source for the scleractinian coral Stylophora pistillata. For this purpose, experiments were performed using 15N-enriched DFAAs, and %15N enrichment was measured both in animal tissue and...

journals.biologists.com

Urea a source of nitrogen for corals

Urea uptake by the scleractinian coral Stylophora pistillata

Urea can be one of the major sources of nitrogen for phytoplankton, but little is known about its importance for corals. Experiments were therefore de…

www.sciencedirect.com

Diazotrpophs a source of nitrogen for corals

Diazotrophs: a non-negligible source of nitrogen for the tropical coral Stylophora pistillata - PubMed

Corals are mixotrophs: they are able to fix inorganic carbon through the activity of their symbiotic dinoflagellates and to gain nitrogen from predation on plankton and uptake of dissolved organic and inorganic nutrients. They also live in close association with diverse diazotrophic communities...

pubmed.ncbi.nlm.nih.gov

Context Dependant Effects of Nutrient Loading on the Coral-Algal Mutualism

Context-dependent effects of nutrient loading on the coral-algal mutualism | Request PDF

Request PDF | Context-dependent effects of nutrient loading on the coral-algal mutualism | Human-mediated increases in nutrient availability alter patterns of primary production, impact species diversity, and threaten ecosystem function.... | Find, read and cite all the research you need on...

www.researchgate.net

An experimental mesocosm for long-term studies of reef corals | Journal of the Marine Biological Association of the United Kingdom | Cambridge Core

An experimental mesocosm for long-term studies of reef corals - Volume 92 Issue 4

www.cambridge.org

An Experimental Mesocosm for Longterm Studies of Reef Corals

Phosphate Deficiency:
Nutrient enrichment can increase the susceptibility of reef corals to bleaching:

Nutrient enrichment can increase the susceptibility of reef corals to bleaching - Nature Climate Change

Increased dissolved inorganic nitrogen (DIN) concentrations in sea water have been linked to a reduction of the temperature threshold at which corals bleach, however, the mechanism underlying this change is not known. This phenomenon is now explained in terms of increased phosphatase activities...

www.nature.com

Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont:

Frontiers | Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont

Reef building corals associated with symbiotic algae (zooxanthellae) can access environmental nutrients from different sources, most significantly via the up...

www.frontiersin.org

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Enrichment of reef environments with dissolved inorganic nutrients is considered a major threat to the survival of corals living in symbiosis with din…

www.sciencedirect.com

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Phosphate contamination can negatively affect corals, modifying growth rates, skeletal density, reproduction, mortality, and zooxanthellae. We determi…

www.sciencedirect.com

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

SUMMARYSeveral untested aspects of the regulation of inorganic nutrient uptake were examined using nutrient depletion experiments with the symbiotic coral Stylophora pistillata. The total inhibition of phosphate uptake in artificial seawater lacking sodium indicates the involvement of a...

jeb.biologists.org

Phosphorus metabolism of reef organisms with algal symbionts

https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecm.1217?casa_token=ziDzrEEJ8g0AAAAA%3AHnfuGTIntMdqOtx2ij-lnoTh7qVg8VBhYFz98e60zfBEvx5IcIVGhmlpUYmzIJuqUNVm0sG8_0vth6lq

2657円まるいち 博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

2657円まるいち 博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

therichross.com

Holy hell! You rock! This and the references in the stuff you posted will be plenty to keep me going! Wish I could like this twice.